Since 11/2003 Ecole des Mines de Paris, Fontainebleau, France.
PhD candidate in the Center for Computational Biology, under the supervision of Jean-Philippe Vert: « kernel methods for chemoinformatics ».
Design of kernel functions for 2D and 3D structures of molecules.
Prediction of biological properties in classification, regression and ranking settings.
2002-2003 Ecole Normale Supérieure de Cachan, Cachan, France.
Master of Science in digital image analysis and machine learning, with honours.
1997-2002 Institut National des Sciences Appliquées, Rouen, France.
School of Engineering, Computer Science department.
EXPERIENCES
04/2003 - 10/2003 Ecole des Mines de Paris, Center for Computational Biology, Fontainebleau, France.
M.Sci. Thesis: «Graph kernels and virtual screening of molecules ».
02/2002 - 08/2002 Pertinence Data Intelligence, Paris, France.
Engineer Intern: « Machine learning for the quality control of a production line ».
10/2001 - 02/2002 Technologies Nouvelles, Déville les Rouen, France.
Partnership with the Computer Science department of INSA de Rouen: « Machine Vision for the analysis of road defects ».
07/2001 - 08/2001 Alsthom, Notre Dame de Gravenchon, France.
Technician intern. SQL database development.
PUBLICATIONS
Journal:
P. Mahé, N. Ueda, T. Akutsu, J.-L. Perret and J.-P. Vert, "Graph kernels for molecular structure-activity relationship analysis with support vector machines", Journal of Chemical Information and Modeling, 2005, vol.45(4), pp. 939-951.
P. Mahé, L. Ralaivola, V. Stoven and J.-P. Vert, "The pharmacophore kernel for virtual screening with support vector machines", Journal of Chemical Information and Modeling, 2006, to appear.
Conferences:
P. Mahé, N. Ueda, T. Akutsu, J.-L. Perret and J.-P. Vert, "Extensions of marginalized graph kernels", Proceedings of the 21st International Conference of Machine Learning, 2004.
P. Mahé, N. Ueda, T. Akutsu, J.-L. Perret and J.-P. Vert, "QSAR analysis with SVM and graph kernels", posters presented at the Conference on Chemoinformatics, Sheffield 2004 and the Genome Informatics Workshop, Tokyo 2004.